Multiplex Paper-Based Colorimetric DNA Sensor Using Pyrrolidinyl Peptide Nucleic Acid-Induced AgNPs Aggregation for Detecting MERS-CoV, MTB, and HPV Oligonucleotides
Identifieur interne : 000C69 ( Main/Exploration ); précédent : 000C68; suivant : 000C70Multiplex Paper-Based Colorimetric DNA Sensor Using Pyrrolidinyl Peptide Nucleic Acid-Induced AgNPs Aggregation for Detecting MERS-CoV, MTB, and HPV Oligonucleotides
Auteurs : Prinjaporn Teengam ; Weena Siangproh [Thaïlande] ; Adisorn Tuantranont [Thaïlande] ; Tirayut Vilaivan ; Orawon Chailapakul [Thaïlande] ; Charles S. Henry [États-Unis]Source :
- Analytical Chemistry [ 0003-2700 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN (analyse), ADN bactérien (analyse), ADN viral (analyse), Acides nucléiques peptidiques (), Argent (), Colorimétrie (), Coronavirus du syndrome respiratoire du Moyen-Orient (génétique), Humains, Hybridation d'acides nucléiques, Limite de détection, Mycobacterium tuberculosis (génétique), Nanoparticules métalliques (), Oligonucléotides (), Oligonucléotides (métabolisme), Papier, Papillomaviridae (génétique), Séquence nucléotidique, Traitement d'image par ordinateur.
- MESH :
- analyse : ADN, ADN bactérien, ADN viral.
- génétique : Coronavirus du syndrome respiratoire du Moyen-Orient, Mycobacterium tuberculosis, Papillomaviridae.
- métabolisme : Oligonucléotides.
- Acides nucléiques peptidiques, Argent, Colorimétrie, Humains, Hybridation d'acides nucléiques, Limite de détection, Nanoparticules métalliques, Oligonucléotides, Papier, Séquence nucléotidique, Traitement d'image par ordinateur.
English descriptors
- KwdEn :
- Base Sequence, Colorimetry (methods), DNA (analysis), DNA, Bacterial (analysis), DNA, Viral (analysis), Humans, Image Processing, Computer-Assisted, Limit of Detection, Metal Nanoparticles (chemistry), Middle East Respiratory Syndrome Coronavirus (genetics), Mycobacterium tuberculosis (genetics), Nucleic Acid Hybridization, Oligonucleotides (chemistry), Oligonucleotides (metabolism), Paper, Papillomaviridae (genetics), Peptide Nucleic Acids (chemistry), Silver (chemistry).
- MESH :
- chemical , analysis : DNA, DNA, Bacterial, DNA, Viral.
- chemistry : Metal Nanoparticles, Oligonucleotides, Peptide Nucleic Acids, Silver.
- genetics : Middle East Respiratory Syndrome Coronavirus, Mycobacterium tuberculosis, Papillomaviridae.
- chemical , metabolism : Oligonucleotides.
- methods : Colorimetry.
- Base Sequence, Humans, Image Processing, Computer-Assisted, Limit of Detection, Nucleic Acid Hybridization, Paper.
Abstract
The development of simple fluorescent
and colorimetric assays that
enable point-of-care DNA and RNA detection has been a topic of significant
research because of the utility of such assays in resource limited
settings. The most common motifs utilize hybridization to a complementary
detection strand coupled with a sensitive reporter molecule. Here,
a paper-based colorimetric assay for DNA detection based on pyrrolidinyl
peptide nucleic acid (acpcPNA)-induced nanoparticle aggregation is
reported as an alternative to traditional colorimetric approaches.
PNA probes are an attractive alternative to DNA and RNA probes because
they are chemically and biologically stable, easily synthesized, and
hybridize efficiently with the complementary DNA strands. The acpcPNA
probe contains a single positive charge from the lysine at C-terminus
and causes aggregation of citrate anion-stabilized silver nanoparticles
(AgNPs) in the absence of complementary DNA. In the presence of target
DNA, formation of the anionic DNA-acpcPNA duplex results in dispersion
of the AgNPs as a result of electrostatic repulsion, giving rise to
a detectable color change. Factors affecting the sensitivity and selectivity
of this assay were investigated, including ionic strength, AgNP concentration,
PNA concentration, and DNA strand mismatches. The method was used
for screening of synthetic Middle East respiratory syndrome coronavirus
(MERS-CoV),
Url:
DOI: 10.1021/acs.analchem.7b00255
PubMed: 28394582
PubMed Central: 7077925
Affiliations:
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Le document en format XML
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Pyrrolidinyl Peptide Nucleic Acid-Induced AgNPs Aggregation for Detecting
MERS-CoV, MTB, and HPV Oligonucleotides</title><author><name sortKey="Teengam, Prinjaporn" sort="Teengam, Prinjaporn" uniqKey="Teengam P" first="Prinjaporn" last="Teengam">Prinjaporn Teengam</name><affiliation><nlm:aff id="aff1a">Program in Petrochemistry, Faculty of Science,</nlm:aff><wicri:noCountry code="subfield">Faculty of Science</wicri:noCountry></affiliation></author><author><name sortKey="Siangproh, Weena" sort="Siangproh, Weena" uniqKey="Siangproh W" first="Weena" last="Siangproh">Weena Siangproh</name><affiliation wicri:level="1"><nlm:aff id="aff2">Department of Chemistry, Faculty of Science,<institution>Srinakharinwirot University</institution>, Bangkok, 10110,<country>Thailand</country></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Tuantranont, Adisorn" sort="Tuantranont, Adisorn" uniqKey="Tuantranont A" first="Adisorn" last="Tuantranont">Adisorn Tuantranont</name><affiliation wicri:level="1"><nlm:aff id="aff3">Nanoelectronics and MEMS Laboratory,<institution>National Electronics and Computer Technology Center</institution>, Pathumthani 12120,<country>Thailand</country></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Vilaivan, Tirayut" sort="Vilaivan, Tirayut" uniqKey="Vilaivan T" first="Tirayut" last="Vilaivan">Tirayut Vilaivan</name><affiliation><nlm:aff id="aff1a">Organic Synthesis Research Unit, Department of Chemistry, Faculty of Science,</nlm:aff><wicri:noCountry code="subfield">Faculty of Science</wicri:noCountry></affiliation></author><author><name sortKey="Chailapakul, Orawon" sort="Chailapakul, Orawon" uniqKey="Chailapakul O" first="Orawon" last="Chailapakul">Orawon Chailapakul</name><affiliation><nlm:aff wicri:cut=", and" id="aff1a">Electrochemistry and Optical Spectroscopy Research Unit, Department of Chemistry</nlm:aff><wicri:noCountry code="subfield">Department of Chemistry</wicri:noCountry></affiliation><affiliation wicri:level="1"><nlm:aff id="aff1a">National Center of Excellence for Petroleum, Petrochemicals, and Advanced Materials,<institution>Chulalongkorn University</institution>, Pathumwan, Bangkok, 10330,<country>Thailand</country></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Henry, Charles S" sort="Henry, Charles S" uniqKey="Henry C" first="Charles S." last="Henry">Charles S. Henry</name><affiliation wicri:level="1"><nlm:aff id="aff7">Departments of Chemistry and Chemical and Biological Engineering,<institution>Colorado State University</institution>, Fort Collins, Colorado 80523,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">28394582</idno><idno type="pmc">7077925</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7077925</idno><idno type="RBID">PMC:7077925</idno><idno type="doi">10.1021/acs.analchem.7b00255</idno><date when="2017">2017</date><idno type="wicri:Area/Pmc/Corpus">000126</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000126</idno><idno type="wicri:Area/Pmc/Curation">000126</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000126</idno><idno type="wicri:Area/Pmc/Checkpoint">000772</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000772</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:28394582</idno><idno type="wicri:Area/PubMed/Corpus">000D24</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000D24</idno><idno type="wicri:Area/PubMed/Curation">000D24</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000D24</idno><idno type="wicri:Area/PubMed/Checkpoint">000B99</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000B99</idno><idno type="wicri:Area/Ncbi/Merge">001A07</idno><idno type="wicri:Area/Ncbi/Curation">001A07</idno><idno type="wicri:Area/Ncbi/Checkpoint">001A07</idno><idno type="wicri:doubleKey">0003-2700:2017:Teengam P:multiplex:paper:based</idno><idno type="wicri:Area/Main/Merge">000C72</idno><idno type="wicri:Area/Main/Curation">000C69</idno><idno type="wicri:Area/Main/Exploration">000C69</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Multiplex Paper-Based Colorimetric DNA Sensor Using
Pyrrolidinyl Peptide Nucleic Acid-Induced AgNPs Aggregation for Detecting
MERS-CoV, MTB, and HPV Oligonucleotides</title><author><name sortKey="Teengam, Prinjaporn" sort="Teengam, Prinjaporn" uniqKey="Teengam P" first="Prinjaporn" last="Teengam">Prinjaporn Teengam</name><affiliation><nlm:aff id="aff1a">Program in Petrochemistry, Faculty of Science,</nlm:aff><wicri:noCountry code="subfield">Faculty of Science</wicri:noCountry></affiliation></author><author><name sortKey="Siangproh, Weena" sort="Siangproh, Weena" uniqKey="Siangproh W" first="Weena" last="Siangproh">Weena Siangproh</name><affiliation wicri:level="1"><nlm:aff id="aff2">Department of Chemistry, Faculty of Science,<institution>Srinakharinwirot University</institution>, Bangkok, 10110,<country>Thailand</country></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Tuantranont, Adisorn" sort="Tuantranont, Adisorn" uniqKey="Tuantranont A" first="Adisorn" last="Tuantranont">Adisorn Tuantranont</name><affiliation wicri:level="1"><nlm:aff id="aff3">Nanoelectronics and MEMS Laboratory,<institution>National Electronics and Computer Technology Center</institution>, Pathumthani 12120,<country>Thailand</country></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Vilaivan, Tirayut" sort="Vilaivan, Tirayut" uniqKey="Vilaivan T" first="Tirayut" last="Vilaivan">Tirayut Vilaivan</name><affiliation><nlm:aff id="aff1a">Organic Synthesis Research Unit, Department of Chemistry, Faculty of Science,</nlm:aff><wicri:noCountry code="subfield">Faculty of Science</wicri:noCountry></affiliation></author><author><name sortKey="Chailapakul, Orawon" sort="Chailapakul, Orawon" uniqKey="Chailapakul O" first="Orawon" last="Chailapakul">Orawon Chailapakul</name><affiliation><nlm:aff wicri:cut=", and" id="aff1a">Electrochemistry and Optical Spectroscopy Research Unit, Department of Chemistry</nlm:aff><wicri:noCountry code="subfield">Department of Chemistry</wicri:noCountry></affiliation><affiliation wicri:level="1"><nlm:aff id="aff1a">National Center of Excellence for Petroleum, Petrochemicals, and Advanced Materials,<institution>Chulalongkorn University</institution>, Pathumwan, Bangkok, 10330,<country>Thailand</country></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Henry, Charles S" sort="Henry, Charles S" uniqKey="Henry C" first="Charles S." last="Henry">Charles S. Henry</name><affiliation wicri:level="1"><nlm:aff id="aff7">Departments of Chemistry and Chemical and Biological Engineering,<institution>Colorado State University</institution>, Fort Collins, Colorado 80523,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Analytical Chemistry</title><idno type="ISSN">0003-2700</idno><idno type="eISSN">1520-6882</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence</term><term>Colorimetry (methods)</term><term>DNA (analysis)</term><term>DNA, Bacterial (analysis)</term><term>DNA, Viral (analysis)</term><term>Humans</term><term>Image Processing, Computer-Assisted</term><term>Limit of Detection</term><term>Metal Nanoparticles (chemistry)</term><term>Middle East Respiratory Syndrome Coronavirus (genetics)</term><term>Mycobacterium tuberculosis (genetics)</term><term>Nucleic Acid Hybridization</term><term>Oligonucleotides (chemistry)</term><term>Oligonucleotides (metabolism)</term><term>Paper</term><term>Papillomaviridae (genetics)</term><term>Peptide Nucleic Acids (chemistry)</term><term>Silver (chemistry)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN (analyse)</term><term>ADN bactérien (analyse)</term><term>ADN viral (analyse)</term><term>Acides nucléiques peptidiques ()</term><term>Argent ()</term><term>Colorimétrie ()</term><term>Coronavirus du syndrome respiratoire du Moyen-Orient (génétique)</term><term>Humains</term><term>Hybridation d'acides nucléiques</term><term>Limite de détection</term><term>Mycobacterium tuberculosis (génétique)</term><term>Nanoparticules métalliques ()</term><term>Oligonucléotides ()</term><term>Oligonucléotides (métabolisme)</term><term>Papier</term><term>Papillomaviridae (génétique)</term><term>Séquence nucléotidique</term><term>Traitement d'image par ordinateur</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA</term><term>DNA, Bacterial</term><term>DNA, Viral</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ADN</term><term>ADN bactérien</term><term>ADN viral</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Metal Nanoparticles</term><term>Oligonucleotides</term><term>Peptide Nucleic Acids</term><term>Silver</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Middle East Respiratory Syndrome Coronavirus</term><term>Mycobacterium tuberculosis</term><term>Papillomaviridae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus du syndrome respiratoire du Moyen-Orient</term><term>Mycobacterium tuberculosis</term><term>Papillomaviridae</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Oligonucleotides</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Colorimetry</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Oligonucléotides</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Humans</term><term>Image Processing, Computer-Assisted</term><term>Limit of Detection</term><term>Nucleic Acid Hybridization</term><term>Paper</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Acides nucléiques peptidiques</term><term>Argent</term><term>Colorimétrie</term><term>Humains</term><term>Hybridation d'acides nucléiques</term><term>Limite de détection</term><term>Nanoparticules métalliques</term><term>Oligonucléotides</term><term>Papier</term><term>Séquence nucléotidique</term><term>Traitement d'image par ordinateur</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p content-type="toc-graphic"><graphic xlink:href="ac7b00255_0009" id="ab-d30e205"></graphic></p><p>The development of simple fluorescent
and colorimetric assays that
enable point-of-care DNA and RNA detection has been a topic of significant
research because of the utility of such assays in resource limited
settings. The most common motifs utilize hybridization to a complementary
detection strand coupled with a sensitive reporter molecule. Here,
a paper-based colorimetric assay for DNA detection based on pyrrolidinyl
peptide nucleic acid (acpcPNA)-induced nanoparticle aggregation is
reported as an alternative to traditional colorimetric approaches.
PNA probes are an attractive alternative to DNA and RNA probes because
they are chemically and biologically stable, easily synthesized, and
hybridize efficiently with the complementary DNA strands. The acpcPNA
probe contains a single positive charge from the lysine at C-terminus
and causes aggregation of citrate anion-stabilized silver nanoparticles
(AgNPs) in the absence of complementary DNA. In the presence of target
DNA, formation of the anionic DNA-acpcPNA duplex results in dispersion
of the AgNPs as a result of electrostatic repulsion, giving rise to
a detectable color change. Factors affecting the sensitivity and selectivity
of this assay were investigated, including ionic strength, AgNP concentration,
PNA concentration, and DNA strand mismatches. The method was used
for screening of synthetic Middle East respiratory syndrome coronavirus
(MERS-CoV), <italic>Mycobacterium tuberculosis</italic> (MTB), and human papillomavirus (HPV) DNA based on a colorimetric
paper-based analytical device developed using the aforementioned principle.
The oligonucleotide targets were detected by measuring the color change
of AgNPs, giving detection limits of 1.53 (MERS-CoV), 1.27 (MTB),
and 1.03 nM (HPV). The acpcPNA probe exhibited high selectivity for
the complementary oligonucleotides over single-base-mismatch, two-base-mismatch,
and noncomplementary DNA targets. The proposed paper-based colorimetric
DNA sensor has potential to be an alternative approach for simple,
rapid, sensitive, and selective DNA detection.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Wei, F" uniqKey="Wei F">F. Wei</name></author><author><name sortKey="Lillehoj, P B" uniqKey="Lillehoj P">P. B. Lillehoj</name></author><author><name sortKey="Ho, C M" uniqKey="Ho C">C.-M. Ho</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smith, I" uniqKey="Smith I">I. Smith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Burd, E M" uniqKey="Burd E">E. M. Burd</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De X0a Wit, E" uniqKey="De X0a Wit E">E. de
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Villa</name></author><author><name sortKey="Denny, L" uniqKey="Denny L">L. Denny</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Thaïlande</li><li>États-Unis</li></country></list><tree><noCountry><name sortKey="Teengam, Prinjaporn" sort="Teengam, Prinjaporn" uniqKey="Teengam P" first="Prinjaporn" last="Teengam">Prinjaporn Teengam</name><name sortKey="Vilaivan, Tirayut" sort="Vilaivan, Tirayut" uniqKey="Vilaivan T" first="Tirayut" last="Vilaivan">Tirayut Vilaivan</name></noCountry><country name="Thaïlande"><noRegion><name sortKey="Siangproh, Weena" sort="Siangproh, Weena" uniqKey="Siangproh W" first="Weena" last="Siangproh">Weena Siangproh</name></noRegion><name sortKey="Chailapakul, Orawon" sort="Chailapakul, Orawon" uniqKey="Chailapakul O" first="Orawon" last="Chailapakul">Orawon Chailapakul</name><name sortKey="Tuantranont, Adisorn" sort="Tuantranont, Adisorn" uniqKey="Tuantranont A" first="Adisorn" last="Tuantranont">Adisorn Tuantranont</name></country><country name="États-Unis"><noRegion><name sortKey="Henry, Charles S" sort="Henry, Charles S" uniqKey="Henry C" first="Charles S." last="Henry">Charles S. 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